Common Reasons for WHT Refund Rejections and How to Avoid Them

Introduction

Withholding Tax (WHT) refunds in Egypt can offer significant financial relief for foreign companies and multinationals receiving cross-border payments.
But despite eligibility under Double Tax Treaties (DTTs), many refund applications are rejected by the Egyptian Tax Authority (ETA) due to documentation gaps, misinterpretation of treaty rules, or inconsistencies in the refund file.

Understanding why refund claims get rejected and how to proactively avoid these issues is essential for a smooth approval process.

1. Missing or Invalid Tax Residency Certificate (TRC)

Why ETA Rejects It

The TRC is the most critical document supporting the right to benefit from a tax treaty. ETA frequently rejects claims when:

  • The TRC is expired

  • The TRC covers a different year than the payment period

  • The TRC is not stamped or not original

  • The legal name doesn’t match invoices/contracts

How to Avoid It

  • Obtain TRC early each year

  • Make sure names match exactly

  • Use original stamped copies

  • Align TRC validity with payment dates

2. Failure to Prove Beneficial Ownership

Why ETA Rejects It

Even if a treaty applies, ETA requires proof that the foreign entity is the actual Beneficial Owner, not a conduit or intermediary.

Rejection occurs when the file does not show:

  • Substance in the foreign country

  • Real operations (employees/offices)

  • Control and decision-making

  • Economic ownership of the income

How to Avoid It

Submit:

  • Beneficial Ownership declaration

  • Company profile & org chart

  • Evidence of employees, offices, website

  • Financial statements

3. Incorrect Classification of the Payment

Why ETA Rejects It

Many claims fail because the taxpayer chooses the wrong treaty article. For example:

  • Treating technical services as pure services

  • Misclassifying cloud services as royalties

  • Mislabeling software payments

  • Using Article 7 incorrectly

How to Avoid It

Conduct a clear treaty analysis:

  • Identify correct article (Service? Royalty? Interest?)

  • Match service description with treaty definitions

  • Provide documentation proving classification

4. Insufficient Proof of Service Delivery

Why ETA Rejects It

ETA often rejects claims when there is not enough evidence that:

  • The service was actually performed

  • The service provided value to the Egyptian company

  • Deliverables match the invoice

How to Avoid It

Provide:

  • Emails

  • Timesheets

  • Reports & deliverables

  • Meeting minutes

  • Screenshots or system logs

5. No Proof of Payment to the Foreign Provider

Why ETA Rejects It

Even if an invoice exists, ETA must confirm:

  • The foreign entity received the payment

  • Amounts match the invoice

  • Date and currency are correct

How to Avoid It

Provide:

  • Bank SWIFT

  • MT103 confirmation

  • Bank statement extract (sensitive details hidden)

  • Payment matching sheet

6. Contract and Invoice Mismatches

Why ETA Rejects It

Any of the following lead to immediate rejection:

  • Contract amount differs from invoice

  • Contract describes different services

  • Contract is missing dates or signatures

  • Contract does not explain cross-border nature

How to Avoid It

Ensure:

  • Contract aligns fully with invoices

  • Services performed match the contract scope

  • Dates and amounts are consistent

7. Missing or Incorrect Form 41 (WHT Certificate)

Why ETA Rejects It

ETA compares the refund amount to Form 41.
Common issues include:

  • Missing Form 41

  • Wrong beneficiary name

  • Wrong WHT rate

  • Figures not matching actual payments

How to Avoid It

  • Cross-check numbers before submission

  • Make sure the payer issued Form 41 correctly

  • Ensure 41 aligns with bank transfers

8. Claiming Treaty Benefits Without Meeting Conditions

Why ETA Rejects It

Some taxpayers rely on treaty benefits without proving eligibility, especially regarding:

  • Permanent Establishment (PE) rules

  • Article-specific requirements

  • Source rules

How to Avoid It

Submit a clear treaty-benefit memo showing:

  • Why the foreign entity has no PE in Egypt

  • Why the treaty article applies

  • How conditions are met

9. Weak or Missing Explanation Letter

Why ETA Rejects It

A poor explanation makes the case unclear.

How to Avoid It

Your cover letter must include:

  • Nature of service

  • Basis for refund

  • Legal references

  • Document index

  • Refund calculation

10. Submitting Incomplete Documentation Package

Why ETA Rejects It

ETA rejects any case lacking a clear and complete file.

How to Avoid It

Prepare a structured file including:

  • TRC

  • BO declaration

  • Contract

  • Invoices

  • Payments

  • Form 41

  • Deliverables

  • Treaty memo

  • Checklist

Conclusion

WHT refund rejections in Egypt usually stem from documentation gaps, inconsistencies, or incorrect treaty interpretation.
But with strong evidence, clear classification, a complete file, and proactive compliance, companies dramatically increase their chances of approval.

Preparing a clean, organized, and audit-ready submission is the key to avoiding delays and securing the refund successfully.